GenomicKB integrates our existing knowledge regarding human genome, epigenome, transcriptome, and 4D nucleome in a large knowledge graph. Different from traditional tabular-structured data, it emphasizes the relations between different perspectives and provides explicit connections between entities of interest. With the flexibility, well-defined schemata and ontologies used in the knowledge graph, it is quite easy to update the existing entities and relations and incrementally add more entities and relations. Therefore, there is a long-term plan to include more human genomic data to GenomicKB.
Feel free to e-mail us if you would like to include new data sources to GenomicKB!
The updates and update plans are listed here in a reverse-chronological order (MM-DD-YYYY).
Update 08-30-2022 (planned):
Add cross-reference URL links to other databases (e.g., Ensembl, UniProt, dbSNP, etc.)
Add ligand-receptor pairs from CellPhoneDB to GenomicKB as edges between genes.
The new query engine launched. More hints are added during user queries and smoother node/edge configuration process is included.
Ontology data in GenomicKB are updated with the newest data from NCBO ontologies.
The new home page of GenomicKB launched.
The first version of GenomicKB web portal launched.